emboss

the european molecular biology open software suite

EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages.

Suggests:

Depends:

Recommends:

  • /usr/bin/aaindexextract
  • /usr/bin/abiview
  • /usr/bin/acdc
  • /usr/bin/acdpretty
  • /usr/bin/acdtable
  • /usr/bin/acdtrace
  • /usr/bin/acdvalid
  • /usr/bin/aligncopy
  • /usr/bin/aligncopypair
  • /usr/bin/antigenic
  • /usr/bin/backtranambig
  • /usr/bin/backtranseq
  • /usr/bin/banana
  • /usr/bin/biosed
  • /usr/bin/btwisted
  • /usr/bin/cai
  • /usr/bin/chaos
  • /usr/bin/charge
  • /usr/bin/checktrans
  • /usr/bin/chips
  • /usr/bin/cirdna
  • /usr/bin/codcmp
  • /usr/bin/codcopy
  • /usr/bin/coderet
  • /usr/bin/compseq
  • /usr/bin/consambig
  • /usr/bin/cpgplot
  • /usr/bin/cpgreport
  • /usr/bin/cusp
  • /usr/bin/cutgextract
  • /usr/bin/cutseq
  • /usr/bin/dan
  • /usr/bin/dbiblast
  • /usr/bin/dbifasta
  • /usr/bin/dbiflat
  • /usr/bin/dbigcg
  • /usr/bin/dbxfasta
  • /usr/bin/dbxflat
  • /usr/bin/dbxgcg
  • /usr/bin/degapseq
  • /usr/bin/density
  • /usr/bin/descseq
  • /usr/bin/diffseq
  • /usr/bin/digest
  • /usr/bin/distmat
  • /usr/bin/dotmatcher
  • /usr/bin/dotpath
  • /usr/bin/dottup
  • /usr/bin/dreg
  • /usr/bin/edialign
  • /usr/bin/einverted
  • /usr/bin/em_cons
  • /usr/bin/em_pscan
  • /usr/bin/embossdata
  • /usr/bin/embossversion
  • /usr/bin/emma
  • /usr/bin/emowse
  • /usr/bin/entret
  • /usr/bin/epestfind
  • /usr/bin/eprimer3
  • /usr/bin/equicktandem
  • /usr/bin/est2genome
  • /usr/bin/etandem
  • /usr/bin/extractalign
  • /usr/bin/extractfeat
  • /usr/bin/extractseq
  • /usr/bin/featcopy
  • /usr/bin/featreport
  • /usr/bin/findkm
  • /usr/bin/freak
  • /usr/bin/fuzznuc
  • /usr/bin/fuzzpro
  • /usr/bin/fuzztran
  • /usr/bin/garnier
  • /usr/bin/geecee
  • /usr/bin/getorf
  • /usr/bin/helixturnhelix
  • /usr/bin/hmoment
  • /usr/bin/iep
  • /usr/bin/infoalign
  • /usr/bin/infobase
  • /usr/bin/inforesidue
  • /usr/bin/infoseq
  • /usr/bin/isochore
  • /usr/bin/jaspextract
  • /usr/bin/jaspscan
  • /usr/bin/jembossctl
  • /usr/bin/lindna
  • /usr/bin/listor
  • /usr/bin/makenucseq
  • /usr/bin/makeprotseq
  • /usr/bin/marscan
  • /usr/bin/maskambignuc
  • /usr/bin/maskambigprot
  • /usr/bin/maskfeat
  • /usr/bin/maskseq
  • /usr/bin/matcher
  • /usr/bin/megamerger
  • /usr/bin/merger
  • /usr/bin/msbar
  • /usr/bin/mwcontam
  • /usr/bin/mwfilter
  • /usr/bin/needle
  • /usr/bin/needleall
  • /usr/bin/newcpgreport
  • /usr/bin/newcpgseek
  • /usr/bin/newseq
  • /usr/bin/nohtml
  • /usr/bin/noreturn
  • /usr/bin/nospace
  • /usr/bin/notab
  • /usr/bin/notseq
  • /usr/bin/nthseq
  • /usr/bin/nthseqset
  • /usr/bin/octanol
  • /usr/bin/oddcomp
  • /usr/bin/palindrome
  • /usr/bin/pasteseq
  • /usr/bin/patmatdb
  • /usr/bin/patmatmotifs
  • /usr/bin/pepcoil
  • /usr/bin/pepinfo
  • /usr/bin/pepnet
  • /usr/bin/pepstats
  • /usr/bin/pepwheel
  • /usr/bin/pepwindow
  • /usr/bin/pepwindowall
  • /usr/bin/plotcon
  • /usr/bin/plotorf
  • /usr/bin/polydot
  • /usr/bin/preg
  • /usr/bin/prettyplot
  • /usr/bin/prettyseq
  • /usr/bin/primersearch
  • /usr/bin/printsextract
  • /usr/bin/profit
  • /usr/bin/prophecy
  • /usr/bin/prophet
  • /usr/bin/prosextract
  • /usr/bin/psiphi
  • /usr/bin/rebaseextract
  • /usr/bin/recoder
  • /usr/bin/redata
  • /usr/bin/remap
  • /usr/bin/restover
  • /usr/bin/restrict
  • /usr/bin/revseq
  • /usr/bin/seealso
  • /usr/bin/seqmatchall
  • /usr/bin/seqret
  • /usr/bin/seqretsetall
  • /usr/bin/seqretsplit
  • /usr/bin/showalign
  • /usr/bin/showdb
  • /usr/bin/showfeat
  • /usr/bin/showorf
  • /usr/bin/showpep
  • /usr/bin/showseq
  • /usr/bin/shuffleseq
  • /usr/bin/sigcleave
  • /usr/bin/silent
  • /usr/bin/sirna
  • /usr/bin/sixpack
  • /usr/bin/sizeseq
  • /usr/bin/skipredundant
  • /usr/bin/skipseq
  • /usr/bin/splitsource
  • /usr/bin/splitter
  • /usr/bin/stretcher
  • /usr/bin/stssearch
  • /usr/bin/supermatcher
  • /usr/bin/syco
  • /usr/bin/tcode
  • /usr/bin/textsearch
  • /usr/bin/tfextract
  • /usr/bin/tfm
  • /usr/bin/tfscan
  • /usr/bin/tmap
  • /usr/bin/tranalign
  • /usr/bin/transeq
  • /usr/bin/trimest
  • /usr/bin/trimseq
  • /usr/bin/trimspace
  • /usr/bin/twofeat
  • /usr/bin/union
  • /usr/bin/vectorstrip
  • /usr/bin/water
  • /usr/bin/whichdb
  • /usr/bin/wobble
  • /usr/bin/wordcount
  • /usr/bin/wordfinder
  • /usr/bin/wordmatch
  • /usr/bin/wossname
  • /usr/bin/yank
  • /usr/lib/emboss/aaindexextract
  • /usr/lib/emboss/abiview
  • /usr/lib/emboss/acdc
  • /usr/lib/emboss/acdpretty
  • /usr/lib/emboss/acdtable
  • /usr/lib/emboss/acdtrace
  • /usr/lib/emboss/acdvalid
  • /usr/lib/emboss/aligncopy
  • /usr/lib/emboss/aligncopypair
  • /usr/lib/emboss/antigenic
  • /usr/lib/emboss/backtranambig
  • /usr/lib/emboss/backtranseq
  • /usr/lib/emboss/banana
  • /usr/lib/emboss/biosed
  • /usr/lib/emboss/btwisted
  • /usr/lib/emboss/cai
  • /usr/lib/emboss/chaos
  • /usr/lib/emboss/charge
  • /usr/lib/emboss/checktrans
  • /usr/lib/emboss/chips
  • /usr/lib/emboss/cirdna
  • /usr/lib/emboss/codcmp
  • /usr/lib/emboss/codcopy
  • /usr/lib/emboss/coderet
  • /usr/lib/emboss/compseq
  • /usr/lib/emboss/cons
  • /usr/lib/emboss/consambig
  • /usr/lib/emboss/cpgplot
  • /usr/lib/emboss/cpgreport
  • /usr/lib/emboss/cusp
  • /usr/lib/emboss/cutgextract
  • /usr/lib/emboss/cutseq
  • /usr/lib/emboss/dan
  • /usr/lib/emboss/dbiblast
  • /usr/lib/emboss/dbifasta
  • /usr/lib/emboss/dbiflat
  • /usr/lib/emboss/dbigcg
  • /usr/lib/emboss/dbxfasta
  • /usr/lib/emboss/dbxflat
  • /usr/lib/emboss/dbxgcg
  • /usr/lib/emboss/degapseq
  • /usr/lib/emboss/density
  • /usr/lib/emboss/descseq
  • /usr/lib/emboss/diffseq
  • /usr/lib/emboss/digest
  • /usr/lib/emboss/distmat
  • /usr/lib/emboss/dotmatcher
  • /usr/lib/emboss/dotpath
  • /usr/lib/emboss/dottup
  • /usr/lib/emboss/dreg
  • /usr/lib/emboss/edialign
  • /usr/lib/emboss/einverted
  • /usr/lib/emboss/embossdata
  • /usr/lib/emboss/embossversion
  • /usr/lib/emboss/emma
  • /usr/lib/emboss/emowse
  • /usr/lib/emboss/entret
  • /usr/lib/emboss/epestfind
  • /usr/lib/emboss/eprimer3
  • /usr/lib/emboss/equicktandem
  • /usr/lib/emboss/est2genome
  • /usr/lib/emboss/etandem
  • /usr/lib/emboss/extractalign
  • /usr/lib/emboss/extractfeat
  • /usr/lib/emboss/extractseq
  • /usr/lib/emboss/featcopy
  • /usr/lib/emboss/featreport
  • /usr/lib/emboss/findkm
  • /usr/lib/emboss/freak
  • /usr/lib/emboss/fuzznuc
  • /usr/lib/emboss/fuzzpro
  • /usr/lib/emboss/fuzztran
  • /usr/lib/emboss/garnier
  • /usr/lib/emboss/geecee
  • /usr/lib/emboss/getorf
  • /usr/lib/emboss/helixturnhelix
  • /usr/lib/emboss/hmoment
  • /usr/lib/emboss/iep
  • /usr/lib/emboss/infoalign
  • /usr/lib/emboss/infobase
  • /usr/lib/emboss/inforesidue
  • /usr/lib/emboss/infoseq
  • /usr/lib/emboss/isochore
  • /usr/lib/emboss/jaspextract
  • /usr/lib/emboss/jaspscan
  • /usr/lib/emboss/jembossctl
  • /usr/lib/emboss/lindna
  • /usr/lib/emboss/listor
  • /usr/lib/emboss/makenucseq
  • /usr/lib/emboss/makeprotseq
  • /usr/lib/emboss/marscan
  • /usr/lib/emboss/maskambignuc
  • /usr/lib/emboss/maskambigprot
  • /usr/lib/emboss/maskfeat
  • /usr/lib/emboss/maskseq
  • /usr/lib/emboss/matcher
  • /usr/lib/emboss/megamerger
  • /usr/lib/emboss/merger
  • /usr/lib/emboss/msbar
  • /usr/lib/emboss/mwcontam
  • /usr/lib/emboss/mwfilter
  • /usr/lib/emboss/needle
  • /usr/lib/emboss/needleall
  • /usr/lib/emboss/newcpgreport
  • /usr/lib/emboss/newcpgseek
  • /usr/lib/emboss/newseq
  • /usr/lib/emboss/nohtml
  • /usr/lib/emboss/noreturn
  • /usr/lib/emboss/nospace
  • /usr/lib/emboss/notab
  • /usr/lib/emboss/notseq
  • /usr/lib/emboss/nthseq
  • /usr/lib/emboss/nthseqset
  • /usr/lib/emboss/octanol
  • /usr/lib/emboss/oddcomp
  • /usr/lib/emboss/palindrome
  • /usr/lib/emboss/pasteseq
  • /usr/lib/emboss/patmatdb
  • /usr/lib/emboss/patmatmotifs
  • /usr/lib/emboss/pepcoil
  • /usr/lib/emboss/pepinfo
  • /usr/lib/emboss/pepnet
  • /usr/lib/emboss/pepstats
  • /usr/lib/emboss/pepwheel
  • /usr/lib/emboss/pepwindow
  • /usr/lib/emboss/pepwindowall
  • /usr/lib/emboss/plotcon
  • /usr/lib/emboss/plotorf
  • /usr/lib/emboss/polydot
  • /usr/lib/emboss/preg
  • /usr/lib/emboss/prettyplot
  • /usr/lib/emboss/prettyseq
  • /usr/lib/emboss/primersearch
  • /usr/lib/emboss/printsextract
  • /usr/lib/emboss/profit
  • /usr/lib/emboss/prophecy
  • /usr/lib/emboss/prophet
  • /usr/lib/emboss/prosextract
  • /usr/lib/emboss/pscan
  • /usr/lib/emboss/psiphi
  • /usr/lib/emboss/rebaseextract
  • /usr/lib/emboss/recoder
  • /usr/lib/emboss/redata
  • /usr/lib/emboss/remap
  • /usr/lib/emboss/restover
  • /usr/lib/emboss/restrict
  • /usr/lib/emboss/revseq
  • /usr/lib/emboss/seealso
  • /usr/lib/emboss/seqmatchall
  • /usr/lib/emboss/seqret
  • /usr/lib/emboss/seqretsetall
  • /usr/lib/emboss/seqretsplit
  • /usr/lib/emboss/showalign
  • /usr/lib/emboss/showdb
  • /usr/lib/emboss/showfeat
  • /usr/lib/emboss/showorf
  • /usr/lib/emboss/showpep
  • /usr/lib/emboss/showseq
  • /usr/lib/emboss/shuffleseq
  • /usr/lib/emboss/sigcleave
  • /usr/lib/emboss/silent
  • /usr/lib/emboss/sirna
  • /usr/lib/emboss/sixpack
  • /usr/lib/emboss/sizeseq
  • /usr/lib/emboss/skipredundant
  • /usr/lib/emboss/skipseq
  • /usr/lib/emboss/splitsource
  • /usr/lib/emboss/splitter
  • /usr/lib/emboss/stretcher
  • /usr/lib/emboss/stssearch
  • /usr/lib/emboss/supermatcher
  • /usr/lib/emboss/syco
  • /usr/lib/emboss/tcode
  • /usr/lib/emboss/textsearch
  • /usr/lib/emboss/tfextract
  • /usr/lib/emboss/tfm
  • /usr/lib/emboss/tfscan
  • /usr/lib/emboss/tmap
  • /usr/lib/emboss/tranalign
  • /usr/lib/emboss/transeq
  • /usr/lib/emboss/trimest
  • /usr/lib/emboss/trimseq
  • /usr/lib/emboss/trimspace
  • /usr/lib/emboss/twofeat
  • /usr/lib/emboss/union
  • /usr/lib/emboss/vectorstrip
  • /usr/lib/emboss/water
  • /usr/lib/emboss/whichdb
  • /usr/lib/emboss/wobble
  • /usr/lib/emboss/wordcount
  • /usr/lib/emboss/wordfinder
  • /usr/lib/emboss/wordmatch
  • /usr/lib/emboss/wossname
  • /usr/lib/emboss/yank
  • /usr/share/doc/emboss/AUTHORS
  • /usr/share/doc/emboss/FAQ.gz
  • /usr/share/doc/emboss/NEWS.gz
  • /usr/share/doc/emboss/README.Debian
  • /usr/share/doc/emboss/THANKS
  • /usr/share/doc/emboss/TODO.Debian
  • /usr/share/doc/emboss/changelog.Debian.gz
  • /usr/share/doc/emboss/changelog.gz
  • /usr/share/doc/emboss/copyright
  • /usr/share/doc/emboss/reference
  • /usr/share/man/man1/aaindexextract.1e.gz
  • /usr/share/man/man1/abiview.1e.gz
  • /usr/share/man/man1/acdc.1e.gz
  • /usr/share/man/man1/acdlog.1e.gz
  • /usr/share/man/man1/acdpretty.1e.gz
  • /usr/share/man/man1/acdrelations.1e.gz
  • /usr/share/man/man1/acdtable.1e.gz
  • /usr/share/man/man1/acdtrace.1e.gz
  • /usr/share/man/man1/acdvalid.1e.gz
  • /usr/share/man/man1/ajbad.1e.gz
  • /usr/share/man/man1/ajfeatest.1e.gz
  • /usr/share/man/man1/ajtest.1e.gz
  • /usr/share/man/man1/aligncopy.1e.gz
  • /usr/share/man/man1/aligncopypair.1e.gz
  • /usr/share/man/man1/antigenic.1e.gz
  • /usr/share/man/man1/backtranambig.1e.gz
  • /usr/share/man/man1/backtranseq.1e.gz
  • /usr/share/man/man1/banana.1e.gz
  • /usr/share/man/man1/biosed.1e.gz
  • /usr/share/man/man1/btwisted.1e.gz
  • /usr/share/man/man1/cai.1e.gz
  • /usr/share/man/man1/chaos.1e.gz
  • /usr/share/man/man1/charge.1e.gz
  • /usr/share/man/man1/checktrans.1e.gz
  • /usr/share/man/man1/chips.1e.gz
  • /usr/share/man/man1/cirdna.1e.gz
  • /usr/share/man/man1/codcmp.1e.gz
  • /usr/share/man/man1/codcopy.1e.gz
  • /usr/share/man/man1/coderet.1e.gz
  • /usr/share/man/man1/complex.1e.gz
  • /usr/share/man/man1/compseq.1e.gz
  • /usr/share/man/man1/cons.1e.gz
  • /usr/share/man/man1/consambig.1e.gz
  • /usr/share/man/man1/corbatest.1e.gz
  • /usr/share/man/man1/cpgplot.1e.gz
  • /usr/share/man/man1/cpgreport.1e.gz
  • /usr/share/man/man1/cusp.1e.gz
  • /usr/share/man/man1/cutgextract.1e.gz
  • /usr/share/man/man1/cutseq.1e.gz
  • /usr/share/man/man1/dan.1e.gz
  • /usr/share/man/man1/dbiblast.1e.gz
  • /usr/share/man/man1/dbifasta.1e.gz
  • /usr/share/man/man1/dbiflat.1e.gz
  • /usr/share/man/man1/dbigcg.1e.gz
  • /usr/share/man/man1/dbxfasta.1e.gz
  • /usr/share/man/man1/dbxflat.1e.gz
  • /usr/share/man/man1/dbxgcg.1e.gz
  • /usr/share/man/man1/dbxreport.1e.gz
  • /usr/share/man/man1/dbxstat.1e.gz
  • /usr/share/man/man1/degapseq.1e.gz
  • /usr/share/man/man1/density.1e.gz
  • /usr/share/man/man1/descseq.1e.gz
  • /usr/share/man/man1/diffseq.1e.gz
  • /usr/share/man/man1/digest.1e.gz
  • /usr/share/man/man1/distmat.1e.gz
  • /usr/share/man/man1/dotmatcher.1e.gz
  • /usr/share/man/man1/dotpath.1e.gz
  • /usr/share/man/man1/dottup.1e.gz
  • /usr/share/man/man1/dreg.1e.gz
  • /usr/share/man/man1/edamclean.1e.gz
  • /usr/share/man/man1/edialign.1e.gz
  • /usr/share/man/man1/einverted.1e.gz
  • /usr/share/man/man1/em_cons.1e.gz
  • /usr/share/man/man1/em_pscan.1e.gz
  • /usr/share/man/man1/embossdata.1e.gz
  • /usr/share/man/man1/embossversion.1e.gz
  • /usr/share/man/man1/emma.1e.gz
  • /usr/share/man/man1/emowse.1e.gz
  • /usr/share/man/man1/ensembltest.1e.gz
  • /usr/share/man/man1/entrails.1e.gz
  • /usr/share/man/man1/entrailsbook.1e.gz
  • /usr/share/man/man1/entrailshtml.1e.gz
  • /usr/share/man/man1/entrailswiki.1e.gz
  • /usr/share/man/man1/entret.1e.gz
  • /usr/share/man/man1/epestfind.1e.gz
  • /usr/share/man/man1/eprimer3.1e.gz
  • /usr/share/man/man1/equicktandem.1e.gz
  • /usr/share/man/man1/est2genome.1e.gz
  • /usr/share/man/man1/etandem.1e.gz
  • /usr/share/man/man1/extractalign.1e.gz
  • /usr/share/man/man1/extractfeat.1e.gz
  • /usr/share/man/man1/extractseq.1e.gz
  • /usr/share/man/man1/featcopy.1e.gz
  • /usr/share/man/man1/featreport.1e.gz
  • /usr/share/man/man1/finddb.1e.gz
  • /usr/share/man/man1/findkm.1e.gz
  • /usr/share/man/man1/freak.1e.gz
  • /usr/share/man/man1/fuzznuc.1e.gz
  • /usr/share/man/man1/fuzzpro.1e.gz
  • /usr/share/man/man1/fuzztran.1e.gz
  • /usr/share/man/man1/garnier.1e.gz
  • /usr/share/man/man1/geecee.1e.gz
  • /usr/share/man/man1/getorf.1e.gz
  • /usr/share/man/man1/helixturnhelix.1e.gz
  • /usr/share/man/man1/histogramtest.1e.gz
  • /usr/share/man/man1/hmoment.1e.gz
  • /usr/share/man/man1/idtell.1e.gz
  • /usr/share/man/man1/iep.1e.gz
  • /usr/share/man/man1/infoalign.1e.gz
  • /usr/share/man/man1/infobase.1e.gz
  • /usr/share/man/man1/inforesidue.1e.gz
  • /usr/share/man/man1/infoseq.1e.gz
  • /usr/share/man/man1/intconv.1e.gz
  • /usr/share/man/man1/isochore.1e.gz
  • /usr/share/man/man1/jaspextract.1e.gz
  • /usr/share/man/man1/jaspscan.1e.gz
  • /usr/share/man/man1/lindna.1e.gz
  • /usr/share/man/man1/listor.1e.gz
  • /usr/share/man/man1/makenucseq.1e.gz
  • /usr/share/man/man1/makeprotseq.1e.gz
  • /usr/share/man/man1/marscan.1e.gz
  • /usr/share/man/man1/maskambignuc.1e.gz
  • /usr/share/man/man1/maskambigprot.1e.gz
  • /usr/share/man/man1/maskfeat.1e.gz
  • /usr/share/man/man1/maskseq.1e.gz
  • /usr/share/man/man1/matcher.1e.gz
  • /usr/share/man/man1/megamerger.1e.gz
  • /usr/share/man/man1/merger.1e.gz
  • /usr/share/man/man1/msbar.1e.gz
  • /usr/share/man/man1/mwcontam.1e.gz
  • /usr/share/man/man1/mwfilter.1e.gz
  • /usr/share/man/man1/needle.1e.gz
  • /usr/share/man/man1/needleall.1e.gz
  • /usr/share/man/man1/newcoils.1e.gz
  • /usr/share/man/man1/newcpgreport.1e.gz
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